Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019312
Fusion event
HBV-GSTA5 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr6
Cytoband
p12.2
Reference genome
Start
End
52697350/52832552 (Hg38)
Location type
Intron1
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/683511; hsa-mir-10524/Downstream/444441;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/161362, chr6-CpG: 19/Downstream/162215
Upstream sequence
aaataatgcttagaacagttactgccatataaaaagtgctattaagtgtttgctattatGTGTTGAATTCAGCTTAATAGAATCATCATCAGGATCACCA
Downstream sequence
ACAGAGAACTCAGGAACAGAAACCACATTGAAATAGAGGGATGGGAAGAGCTGCTGGGCACTGGGTCCTTTCCATGATAAAAGGCAAAATACTCTTCATG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.