Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019313
Fusion event
HBV-RIMS1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
Start
End
72816342/72106639 (Hg38)
Location type
Intron4
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10398/Upstream/703018; hsa-mir-10524/Downstream/861048;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/219574, chr6-CpG: 100/Downstream/75695
Upstream sequence
atgtctggagtttgttccctctgatgttcggacgtattcggaatttcttccttctggtgggtttgtggtcttgctggctcaggagtgaagctgcagacct
Downstream sequence
ctgtttttattgtttgtttgtttgtttTATTTTGCTTTTAGACATGGTTAAAACTTGTATTACTTTTTACAATTACTTTGTTAAATTACGTGTCAGACTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.