ALDH8A1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019315
Fusion event
HBV-ALDH8A1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
135270938/134949800 (Hg38)
End
135270939/134949801 (Hg38)
Location type
Intron5
Target gene
ALDH8A1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10398/Upstream/2834537; hsa-mir-1202/Downstream/29537;
Nearest TSS
ENST00000381078/Upstream/5565; ENST00000447508/Downstream/283;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/631917, chr6-CpG: 35/Downstream/104810
Upstream sequence
gcaaaacatgtaagacacagaataagatatacaacgcaatatcacttatgccacttaaaatgtgtgagcattatacaatacatatttagcaaaaacaaat
Downstream sequence
CATGTTTAACAATCCTACATCTTCCCCCAACTCCCTCTGCTTTTAGAAAACTGTTACCCATAATTGGCCAACATATTAAACACATTTCAGTCTTCTTTAA
Target sequence
T
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate