LPAL2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019316
Fusion event
HBV-LPAL2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr6
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
160931810/160510778 (Hg38)
End
160931812/160510780 (Hg38)
Location type
Intron9
Target gene
LPAL2
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10398/Upstream/1746025; hsa-mir-1913/Downstream/5998574;
Nearest TSS
ENST00000381078/Upstream/162510; ENST00000448126/Downstream/102335;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/147675, chr6-CpG: 36/Downstream/168280
Upstream sequence
TTTAAATAAGAGCTAATTTTTTTAAACCAGTAAGAGTGATGTGATACGATACAACAGTTGAAATACAACTATTTTTTGCCAGTTGATTAAACCCATTCAC
Downstream sequence
CATGTGGAAATTAAACTTAGTTTTTTAAGAATTCCTCAATCTTATACAAGATTTTGAACTGGCGATTTTATGAATCAAAAATTAAATTAAATGAATTGCA
Target sequence
TT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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