VISDB Viral Integration Site DataBase

VIS ID

TVIS10019317

Fusion event

HBV-FKBP14 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr7

Cytoband

p14.3

Reference genome

Start

End

30055903/30016287 (Hg38)

Location type

Intron1

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-577 ; hsa-mir-548e-5p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-8076 ; hsa-mir-5579-5p ; hsa-mir-5011-5p ; hsa-mir-676-3p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-mir-5571-3p ; hsa-mir-101-3p ; hsa-mir-3142 ; hsa-mir-4262 ; hsa-mir-1245b-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-144-3p ; hsa-mir-513b-3p ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-629-3p ; hsa-mir-5587-5p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6801-5p ; hsa-mir-6131 ; hsa-mir-3605-3p ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-296-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6747-3p ; hsa-mir-4722-3p ; hsa-mir-6727-3p ; hsa-mir-4275 ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-4279 ; hsa-mir-5571-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-6872-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-548s ; hsa-mir-7641 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-514b-5p ; hsa-mir-513c-5p ; hsa-mir-4755-3p ; hsa-mir-4695-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-4781-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-142-3p ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-3129-5p ; hsa-mir-3177-5p ; hsa-mir-4280

Nearest miRNA

hsa-mir-1183/Upstream/335459; hsa-mir-10399/Downstream/273507;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/26081, chr7-CpG: 19/Downstream/10516

Upstream sequence

GTATTAAATACGAGTTATGTGCTCAACTGTGAATttatatgaaaaggagattaggacacaacaggcatagaggaaagatcatgtgaagacacagggagaa

Downstream sequence

GGTTATGATCATGTGATTAGATTGAGTCTAATCACAACCTTTCAATCTCAGAAAGTCAGGTCTGATAAGTGCCTAGACTACAATTTTCCATTTTCAtttg