CNTNAP2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019319
Fusion event
HBV-CNTNAP2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr7
Cytoband
q35
Reference genome
GRCh37/hg19
Start
145897134/146200042 (Hg38)
End
145897223/146200131 (Hg38)
Location type
Intron1
Target gene
CNTNAP2
miRNAs that regulate target gene
hsa-mir-218-5p ; hsa-mir-99b-5p ; hsa-mir-4444 ; hsa-mir-6079 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4428 ; hsa-mir-571 ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u
Nearest miRNA
hsa-mir-10399/Upstream/2817242; hsa-mir-153-2/Downstream/1177886;
Nearest TSS
ENST00000635602/Upstream/82782; ENST00000636600/Downstream/574140;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/83050, chr7-CpG: 33/Downstream/2139271
Nearest cancer related gene
CNTNAP2(TSG, No orient, 0)
Upstream sequence
acattgtggaagctttgttctttcgctctttgcaagaaatcttgctgctgctcactctttgggtccacactgcctttatgagctgtaacactcaaccgca
Downstream sequence
GTAGagccaggtgcttcacaacaatgtttcagtgatggaccacttccacatacacaaggatggtctcataaaattataatactggccgggcgtggggctc
Target sequence
TAGTGTGAAGAAGTAGAATCTGTCTAAAATATTCACATGATAACTGTTTTCTTTTTCCAAGACTAGAGCCATTATAAGCTGAAATATAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate