Basic Information
VIS ID
TVIS10019321
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
p23.1
Reference genome
GRCh37/hg19
Start
6629531/6772010 (Hg38)
End
6629531/6772010 (Hg38)
Nearest miRNA
hsa-mir-3674/Upstream/26766; hsa-mir-10400/Downstream/1316931;
Nearest TSS
ENST00000518652/Upstream/24326; ENST00000500823/Downstream/63488;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/62873, chr8-CpG: 20/Downstream/34546
Nearby gene
MIR4659B
Upstream sequence
cagaataacttcacacatctgagagtctgtcttaaaaccaaaaatatgtgcaaattactgatatacaaagatgttctttagaccaatatttataatgcac
Downstream sequence
gaattacaggtgtgagccaccgcacccggccCGTAACACAAATCTTAAAGTCTTTTTAGGGGCTATAAACTCGAACCACTTCCTAGGGAGGTGGATGTTC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate