RALYL _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019324
Fusion event
HBV-RALYL integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
85271492/84359257 (Hg38)
End
85271495/84359260 (Hg38)
Location type
Intron1
Target gene
RALYL
Nearest miRNA
hsa-mir-12123/Upstream/4117784; hsa-mir-10400/Downstream/6846225;
Nearest TSS
ENST00000518652/Upstream/174316; ENST00000518065/Downstream/346667;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/174245, chr8-CpG: 47/Downstream/747810
Upstream sequence
cttctgaaatctaggtgggggttcctgaacctcaatacttgacttctgtgaacccacaggctcaacactatgtggaagctgtcaagggttagggcttgca
Downstream sequence
ACAAAAATTTTCATTATTGAATGCTATTATCTTTTAGGTTTCTACTGAATTAGCATAAACCACTTTTGTTAAGTTAACCATCTATCCTTGTGAAGTGACT
Target sequence
CAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate