Basic Information
VIS ID
TVIS10019327
Fusion event
HBV-LINC00536 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
117187491/116175266 (Hg38)
End
117187491/116175266 (Hg38)
Location type
Intron10
Target gene
LINC00536
Nearest miRNA
hsa-mir-12123/Upstream/3531683; hsa-mir-10400/Downstream/699462;
Nearest TSS
ENST00000518652/Upstream/365593; ENST00000519443/Downstream/149793;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/505870, chr8-CpG: 21/Downstream/580425
Upstream sequence
TTATTTTGTTTAGGATTAAATACAATTTGTGAAAAGTATTTTATAAAAAAGgatcgagaccatcctggctaacatggtgaaaccctgtctctactaaaaa
Downstream sequence
TTTCATGTTAGAGTTAATAAGACTCACTCACCAAGGAAGGGAGTGGGGTGGGAGTGGCATGGGAGAAGAGACTAAACTCTAGCTACTTGTGTAAGATGGA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate