Basic Information
VIS ID
TVIS10019328
Fusion event
HBV-chr8 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
140166043/139153800 (Hg38)
End
140166043/139153800 (Hg38)
Nearest miRNA
hsa-mir-1204/Upstream/4348855; hsa-mir-10400/Downstream/1578764;
Nearest TSS
ENST00000518652/Upstream/25847; ENST00000518354/Downstream/309216;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/275596, chr8-CpG: 17/Downstream/465053
Nearby gene
KCNK9
Upstream sequence
GCTCACTTTGCACCATAGCCCAGAGCCAGGGAAGCTCTGCTGGGGGTGTGGGGCGTGGGAAATAATAATCTAAGACTATTGATATGAGCTGAATCTTGAT
Downstream sequence
CTGAGATGCGCTTTTGTGTAATGAGAAGGCTGAGATCGGGGAGCCAGAGGCTCTTCATGACTACAGAGGCAGCAGGATGTGAGAACTGCAGACGCTTAGG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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