Basic Information
VIS ID
TVIS10019329
Fusion event
HBV-LOC105376041 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
38440995/38440998 (Hg38)
End
38440995/38440998 (Hg38)
Location type
Intronic
Target gene
LOC105376041
Nearest miRNA
hsa-mir-101-2/Upstream/1547467; hsa-let-7a-1/Downstream/2488012;
Nearest TSS
ENST00000422679/Upstream/16551; ENST00000471864/Downstream/104374;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/16549, chr9-CpG: 20/Downstream/37286
Nearby gene
IGFBPL1
Upstream sequence
aaaaaaaaaaaaaaagaaTAGTTGGcaaatacttagtgtgcatctactctatgccaggtactctactaggtggtgggaatttagcactgaataaaaatgc
Downstream sequence
aaatagggaggaagaaagaaaaagagggaaggaaggCTCGTTTATTGAACCCAGGCTGCATGCCAGACATTACTTTTGGCTTTTTCATATATGCAATGCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate