VISDB Viral Integration Site DataBase

VIS ID

TVIS10019330

Fusion event

HBV-PSAT1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr9

Cytoband

q21.2

Reference genome

Start

End

80919856/78304940 (Hg38)

Location type

Exon4

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-504-5p ; hsa-mir-342-3p ; hsa-mir-125b-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-4433a-5p ; hsa-mir-548e-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-126-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-510-3p ; hsa-mir-545-3p ; hsa-mir-562 ; hsa-mir-1468-3p ; hsa-mir-708-3p ; hsa-mir-548n ; hsa-mir-4477a ; hsa-mir-4524a-5p ; hsa-mir-548an ; hsa-mir-4742-5p ; hsa-mir-4524b-5p ; hsa-mir-6508-5p ; hsa-mir-6838-5p ; hsa-mir-8067 ; hsa-mir-508-5p ; hsa-mir-5692a ; hsa-mir-6867-5p ; hsa-mir-3200-3p ; hsa-mir-4639-5p ; hsa-mir-186-5p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-3978 ; hsa-mir-4790-3p ; hsa-mir-4465 ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-7162-5p ; hsa-mir-516b-3p ; hsa-mir-516a-3p ; hsa-mir-2115-5p ; hsa-mir-1224-3p ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-145-5p ; hsa-mir-5195-3p ; hsa-mir-548c-3p ; hsa-mir-33b-5p ; hsa-mir-33a-5p ; hsa-mir-203a-3p ; hsa-mir-302a-5p ; hsa-mir-140-3p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-642b-5p ; hsa-mir-124-5p ; hsa-mir-1277-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548ac ; hsa-mir-548bb-3p

Nearest miRNA

hsa-mir-101-2/Upstream/7494856; hsa-let-7a-1/Downstream/5664808;

Nearest TSS

Nearest CpG islands

None/Target, chr9-CpG: 64/Upstream/7245, chr9-CpG: 280/Downstream/1265624

Upstream sequence

aaaaatcttatagatactgtgttccatgaaggtacacgagtgcaccttcagcatgattctatttgtattaacttcaaaaatcaacaaaattaatcagtga

Downstream sequence

aggtcttttacctccttggttaaatttattcctgggtgttttatatatatatatatacacacatatatataaatatatatatacacacatatatataaat