Basic Information
VIS ID
TVIS10019331
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr9
Cytoband
q32
Reference genome
GRCh37/hg19
Start
116196836/113434556 (Hg38)
End
116196836/113434556 (Hg38)
Fragile sites / regions
FRA9E
Nearest miRNA
hsa-let-7a-1/Upstream/1502387; hsa-mir-12126/Downstream/774878;
Nearest TSS
ENST00000422679/Upstream/23814; ENST00000466735/Downstream/10175;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/23746, chr9-CpG: 43/Downstream/28927
Nearby gene
RGS3
Upstream sequence
agaccattgttacctcctgactacactactgcaatatggcccttgcttgtatttcactttctatgttgttcccatttattcatcaagtgaaaacccaagt
Downstream sequence
TCTGGGAGTACAGAATCACGAGTTTCTTCCTGGATTGTGGTGTGATTGCCAGGTACACTTCAGAGTGGGCAAAGGAACTCCTTTCTTTCAGATTTTCCAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate