Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019334
Fusion event
HBV-PCDH15 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
Start
End
57304380/55544620 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1265/Upstream/936663; hsa-mir-107/Downstream/1759859;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2672954, chr10-CpG: 36/Downstream/83688
Nearby gene
Upstream sequence
TTTAGCCATTTCTATTTGTATTTATTTAGATGGTTAGCCTCTGTAACTCTACATTAAAGTAGAGTTTGCTTATGGATCTGTTTCTTAATTTACCAACATT
Downstream sequence
GAATCCTCAGTTTCTTCCTGCTATTCTTCCACCTTTAGTTTTCTGCAAAGCCCATGCACAGTGAACCTCCTTCCAAACAAAAGTGAGTGCTTTGGGCACC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.