Basic Information
VIS ID
TVIS10019335
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
59623226/57863466 (Hg38)
End
59623226/57863466 (Hg38)
Fragile sites / regions
FRA10C
Nearest miRNA
hsa-mir-1265/Upstream/558907; hsa-mir-107/Downstream/5509491;
Nearest TSS
ENST00000439456/Upstream/1502191; ENST00000489785/Downstream/404468;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/1501952, chr10-CpG: 34/Downstream/243155
Nearby gene
IPMK
Upstream sequence
tagattgaaggatgcccatagatactagtgaggatgatcttcttcacccagtctacctattcaaatactaatttctctggaaacacagacacactcagaa
Downstream sequence
TATAAGGCAGCTTTAAACtttccagagaggagtcaataaaatgtttatttggttaacaacttaaatattaaaacatttcggatatcgatgggattgttaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate