Basic Information
VIS ID
TVIS10019337
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
72890826/71131069 (Hg38)
End
72890826/71131069 (Hg38)
Nearest miRNA
hsa-mir-1265/Upstream/3727659; hsa-mir-107/Downstream/659678;
Nearest TSS
ENST00000439456/Upstream/191936; ENST00000335350/Downstream/81501;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/212256, chr10-CpG: 161/Downstream/81249
Nearby gene
UNC5B
Nearest cancer related gene
UNC5B(TSG, No orient)
Upstream sequence
GAGACAAGACCTAAGCAACTAGAGAGCTGGAAACACGTGTTGTTCATAGCTAGATCCCTATCAGGAGCGATTCAGCAGGCAGTGATGGATCAGCTTCCTA
Downstream sequence
cagcctcccaaagtgctgagattacaggcatgagccaccctgcctggctatcacttgtaatttttctgttaaatatgttgaaagatctattttagactta
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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