Basic Information
VIS ID
TVIS10019339
Fusion event
HBV-LOC110599569 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q23.33
Reference genome
GRCh37/hg19
Start
96696571/94936814 (Hg38)
End
96696571/94936814 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA10D
Target gene
LOC110599569
Nearest miRNA
hsa-mir-107/Upstream/5343987; hsa-mir-1287/Downstream/1127501;
Nearest TSS
ENST00000439456/Upstream/162977; ENST00000461906/Downstream/1844;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/390678, chr10-CpG: 63/Downstream/246624
Nearby gene
CYP2C9
Upstream sequence
AATAGAGCTGAAGACTGAGAGCTAATCAGAAGTTCTCAGATGAAACTAGATTCTTGATATTGCTACAAAAGGTTTCTTTCTGATCTGCCATCGCAGTAAC
Downstream sequence
AGATAATGAAAAGTAATCATTTAGTTCACATAAACTCCTTTTTCTCTTCTTCTTTGATTCatctatctatctatctatctatctatctatctatctatct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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