ABCC2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019341
Fusion event
HBV-ABCC2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
101607933/99848176 (Hg38)
End
101607933/99848176 (Hg38)
Location type
Intron30
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Target gene
ABCC2
miRNAs that regulate target gene
hsa-mir-490-3p
Nearest miRNA
hsa-mir-107/Upstream/923608; hsa-mir-1307/Downstream/1126809;
Nearest TSS
ENST00000439456/Upstream/55887; ENST00000427093/Downstream/41319;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/7707, chr10-CpG: 80/Downstream/161380
Upstream sequence
gagggtgagggtgagggttagggtgagggttagggttagggttagggtgagggttagggttagggtgagggttagggttagggtgagggttagggttagg
Downstream sequence
aagaTTGGTTGATATTTATGATCAACTAGTTTGACGTTGGGAAGAAGCTACAGAACCAAAGGGATAGCCTATAATTACTACTGGttttctttctctccct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate