Basic Information
VIS ID
TVIS10019342
Fusion event
HBV-chr10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr10
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
115191733/113431974 (Hg38)
End
115191733/113431974 (Hg38)
Fragile sites / regions
FRA10D ; FRA10A ; FRA10B
Nearest miRNA
hsa-mir-107/Upstream/797720; hsa-mir-202/Downstream/346019;
Nearest TSS
ENST00000439456/Upstream/270743; ENST00000460714/Downstream/118863;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/265982, chr10-CpG: 101/Downstream/247274
Nearby gene
HABP2
Upstream sequence
ctttgagaaatttccaaattgctttccaatagtggctgaactaacttacattcccaccagcagtgtataagtgttcctttttctccacaacctcaccagc
Downstream sequence
AAATCAGCCTTTTAAACTCATTCCAAATGAATATTTTATTAAATCTATATGTTTAGTAGGTAAGGCTTTGTTGTTAAAACAGCAACAAAATTATAACTTT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate