Basic Information
VIS ID
TVIS10019343
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
End
4402792/4381562 (Hg38)
Nearest miRNA
hsa-mir-210/Upstream/525332; hsa-let-7a-2/Downstream/2853204;
Nearby gene
Upstream sequence
caaaatGTGTGTGTGTGTGTATGTATCAATCTCAAGATTGAGCTAATTATACTCTTTGTTTCATCACTGATCCATGTACAGTCTCATTTATTTATTTAtt
Downstream sequence
ttaatataatctatttaaatattaaaatataaatCCCACAACATTAAGGTAGTTGCAAACATCTCTAAACTCCCTCACCCCTGCTTCTAGTTCCATATCA
Target sequence
AGGTGTCTCCAAAGTTTACTCCATACATTTTTACTAAGCATCTGCTAAATTCAGATGAATCTCCAACAAATAATTGAATACTATGGtaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate