Fusion event
HBV-chr11 integration
Detection method
VirusFinder
Disease
Hepatocellular carcinoma (HCC)
End
4402792/4381562 (Hg38)
Nearest miRNA
hsa-mir-210/Upstream/525332; hsa-let-7a-2/Downstream/2853204;
Upstream sequence
caaaatGTGTGTGTGTGTGTATGTATCAATCTCAAGATTGAGCTAATTATACTCTTTGTTTCATCACTGATCCATGTACAGTCTCATTTATTTATTTAtt
Downstream sequence
ttaatataatctatttaaatattaaaatataaatCCCACAACATTAAGGTAGTTGCAAACATCTCTAAACTCCCTCACCCCTGCTTCTAGTTCCATATCA
Target sequence
AGGTGTCTCCAAAGTTTACTCCATACATTTTTACTAAGCATCTGCTAAATTCAGATGAATCTCCAACAAATAATTGAATACTATGGtaa
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.