Basic Information
VIS ID
TVIS10019344
Fusion event
HBV-chr11 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr11
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
57410643/57643170 (Hg38)
End
57410643/57643170 (Hg38)
Nearest miRNA
hsa-mir-129-2/Upstream/1884; hsa-let-7a-2/Downstream/1951907;
Nearest TSS
ENST00000527297/Upstream/31939; ENST00000529773/Downstream/4346;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/75157, chr11-CpG: 19/Downstream/3757
Nearby gene
YPEL4
Upstream sequence
AAGTGAGCAGATAGAACCATAGAAAGCATGCTCACTCTCAAATCGTGCTCATGGAAAGAACGACGTGTTCAGGACTCATGCCTCCCTTTCTCAACATACC
Downstream sequence
GTGTTATCACCCAGTTCATTCTCTTTAAAACGCGTTTAATTAATTTGTCATATTGAGATCGAAAATGGAGTGAAATTATCTCTAGTCTCAGGTCTAACCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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