Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019345
Fusion event
HBV-ADIPOR2 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
Start
End
1813985/1704819 (Hg38)
Location type
Intron1
Target gene
miRNAs that regulate target gene
hsa-mir-375 ; hsa-mir-124-3p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-202-3p ; hsa-mir-1236-3p ; hsa-mir-1304-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4768-5p ; hsa-mir-6515-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4264 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-150-5p ; hsa-mir-4704-3p ; hsa-mir-3613-3p ; hsa-mir-186-5p ; hsa-mir-548c-3p ; hsa-mir-3130-3p ; hsa-mir-4717-5p ; hsa-mir-4753-5p ; hsa-mir-6768-3p ; hsa-mir-3658 ; hsa-mir-3119 ; hsa-mir-549a ; hsa-mir-3678-5p ; hsa-mir-892b ; hsa-mir-127-5p ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-4753-3p ; hsa-mir-6516-3p ; hsa-mir-942-5p ; hsa-mir-4797-3p ; hsa-mir-3121-5p ; hsa-mir-501-5p ; hsa-mir-4793-3p
Nearest miRNA
hsa-mir-3649/Upstream/44437; hsa-let-7i/Downstream/5258880;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/13244, chr12-CpG: 125/Downstream/91292
Upstream sequence
TACTTGCTCTCCATTTTTTGGAATCTCCATTCCTTGTTCCCTTCACGTCTCTTCAGTTTTGCTACCCATCTCCACAAGTGATACTATTTAAGTTTTTGCC
Downstream sequence
AAATTTTTCTTTTTTCTTTTTATTCCTTTTCTTTCTCATACTGGTGGTCAGAAGAAGGCCTTATGATTTAGTAGAATTGAGCAATATTGATAAAGATTGT
Target sequence
CT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.