Basic Information
VIS ID
TVIS10019346
Fusion event
HBV-ITFG2-AS1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
2921040/2811874 (Hg38)
End
2921040/2811874 (Hg38)
Location type
Intronic
Target gene
ITFG2-AS1
Nearest miRNA
hsa-mir-3649/Upstream/1151494; hsa-let-7i/Downstream/4151825;
Nearest TSS
ENST00000382841/Upstream/7936; ENST00000541659/Downstream/507;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/15851, chr12-CpG: 27/Downstream/809
Nearby gene
ITFG2
Upstream sequence
CGGATCCGCCCTCGGGGCCACGGCTTTCCCCGGAGACGCCGCGAGCCCAGACGAGGTGGGAGGGGACCGGGAGAAAGCCCCCCAATCTGATTCGCGCCCA
Downstream sequence
AAAACTCCAAATGAAACTATCtgtattgtccattcttatgctgctataaagaactgccagagactgggtaatttgcaaaggaaagaggtttaattgactc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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