Basic Information
VIS ID
TVIS10019347
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
14409743/14256809 (Hg38)
End
14409743/14256809 (Hg38)
Nearest miRNA
hsa-mir-1244-3/Upstream/1340891; hsa-let-7i/Downstream/3416490;
Nearest TSS
ENST00000382841/Upstream/40219; ENST00000542508/Downstream/108823;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/274806, chr12-CpG: 77/Downstream/310505
Nearby gene
ATF7IP
Upstream sequence
ATAATTGTACTTGTCTGCACTCTTTAATAAAAATTCTGGATTTACTTATCATAATATTATCCAAGTTTGAACAATTATATGCAAAAGGTTATTTCAAATG
Downstream sequence
cgggaacagaaaaccaaacaccacatattctcactcataagtgggagttgaacaatgagaacacatggacacagggagggaaacatcacacatcatggcc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate