Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019349
Fusion event
HBV-SLCO1B3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr12
Cytoband
p12.2
Reference genome
Start
End
20965352/20812418 (Hg38)
Location type
Intron1
Target gene
miRNAs that regulate target gene
hsa-mir-6867-3p ; hsa-mir-188-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-532-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-4639-3p ; hsa-mir-4457 ; hsa-mir-3936 ; hsa-mir-1277-5p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-5011-5p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-190a-3p ; hsa-mir-340-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/3139024; hsa-let-7i/Downstream/3400003;
Nearest CpG islands
Upstream sequence
aggcagtaagaatggagaagagaggccatgcatgagaactttggtggcattaagattccaactgctggccgggcgcggtggctcatgcctgtaatcccag
Downstream sequence
TTAACCTCTTGTATTCTTGATAACCTAAGCTAAGAGACCTGAGAGAAAATAGTGATTTTTTTTCCTTTGCCCCATCATCTGTATGCCACCAAAATGCAAT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.