Basic Information
VIS ID
TVIS10019351
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
48349025/47955242 (Hg38)
End
48349025/47955242 (Hg38)
Fragile sites / regions
FRA12A
Nearest miRNA
hsa-mir-1244-3/Upstream/590973; hsa-let-7i/Downstream/177555;
Nearest TSS
ENST00000382841/Upstream/12194; ENST00000552187/Downstream/8327;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/49488, chr12-CpG: 34/Downstream/8170
Nearby gene
TMEM106C
Upstream sequence
aaaaaaagaagaagaagaaTATGTTTGGTAAACAAAACTTATCTGTGGGCTACCTGAGCTTATAGGCCCCACAAATCCGCAATTTCTGGTCTAATGTTTC
Downstream sequence
AAAACACATATGGTAGGTAAACAAAGTCAACCATAAGTAGGAATAGATTTATAATGTCCTTTATTTAATCTAGGTGTTCAAAAAGAAGTACCTGAATTAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate