Basic Information
VIS ID
TVIS10019352
Fusion event
HBV-LOC105369823 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
q15
Reference genome
GRCh37/hg19
Start
70019214/69625434 (Hg38)
End
70019214/69625434 (Hg38)
Location type
Intronic
Target gene
LOC105369823
Nearest miRNA
hsa-let-7i/Upstream/40611; hsa-mir-1178/Downstream/9793823;
Nearest TSS
ENST00000382841/Upstream/14272; ENST00000549760/Downstream/63777;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/39490, chr12-CpG: 139/Downstream/113126
Nearby gene
LRRC10
Upstream sequence
gagccactgtgcctggccTCACTTTGACATTAACAAGGTACTCAGAAAAGTACATTTAAATGCTTGGGTGAAAAAGAAATTCTTTGTGGTGAAATCCTGG
Downstream sequence
CTGAGTCCATTTACTAGGCAAACCCTTGAAATATGTACTGTTTTGTAAAAAATGTACATTTTACTACATCAACTAACACATGTGGGCTAAAGTGGAATTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate