Basic Information
VIS ID
TVIS10019353
Fusion event
HBV-chr12 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr12
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
76511006/76117226 (Hg38)
End
76511006/76117226 (Hg38)
Nearest miRNA
hsa-let-7i/Upstream/6532403; hsa-mir-1178/Downstream/3302031;
Nearest TSS
ENST00000382841/Upstream/32193; ENST00000550380/Downstream/142613;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/31875, chr12-CpG: 31/Downstream/230903
Nearby gene
NAP1L1
Upstream sequence
TTAGTTTAAGTATGAAGACCATTTTTGTTTCCTCTTAAGAGGGTTTTTATTACACTTTTAGTCTAAGAAGTGTTGCTGCTGAGGCCTTCAGATGTATATT
Downstream sequence
agcaaacacataagatgcattcaataactatacggtggacaaaatgaatTAATTTCAAAGTTGTGAATATGTGATAGTCATTTTTTAACTTATTCAGAAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate