Basic Information
VIS ID
TVIS10019356
Fusion event
HBV-LINC00423 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
33425075/32850937 (Hg38)
End
33425164/32851026 (Hg38)
Location type
Intron1
Target gene
LINC00423
Nearest miRNA
hsa-mir-2276/Upstream/8688433; hsa-mir-1267/Downstream/6813008;
Nearest TSS
ENST00000623511/Upstream/68063; ENST00000487852/Downstream/60624;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/263239, chr13-CpG: 157/Downstream/164764
Upstream sequence
gaagggagaTGGAATTGAGTTACCTCCTTGAGGAGCAATTAATAGATTGAAGTAGGATTTATGCATATTAGCtttaatatataatttaatattaaattag
Downstream sequence
AGTAGTAAAATGAATAAACAGTATGCTTGCAACAATATCATGTCTTTTTGAGCTCTTGTACGTAACATGACTAGGGAGGTAGGGTCCAGGGGTGGTTCAG
Target sequence
GGAGCAAGAGATTTTATTACAGCCAAGAGTAACAAAATTAAATACATTCTATTTCCTTTTATATGTACCTAAAATTCATAAAATAAGAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate