TUBGCP3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019357
Fusion event
HBV-TUBGCP3 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
113230809/112576495 (Hg38)
End
113230809/112576495 (Hg38)
Location type
Intron9
Target gene
TUBGCP3
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-18a-3p ; hsa-let-7b-5p ; hsa-mir-668-3p ; hsa-mir-483-3p ; hsa-mir-4699-3p
Nearest miRNA
hsa-mir-1267/Upstream/2235466; hsa-mir-4502/Downstream/686425;
Nearest TSS
ENST00000623511/Upstream/28323; ENST00000623100/Downstream/10851;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/28882, chr13-CpG: 113/Downstream/10902
Upstream sequence
CTCTTCTTTCCTTTAGTGCTGAGCCGTGGGAGTGGGGTGTGGGAGGTGACTCAGATGGAGAGCCAACTCTAATATAAAGTTTATGGTCGCGTAGGCAAAA
Downstream sequence
ctttaatttaatatttaataatCTGCATAATATGCAGATTAGCATAATATTTAATTATGCAGATTAGCTCTATGCCTAAATGTTATAAAAATCTGTTATT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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