Basic Information
VIS ID
TVIS10019359
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
38055717/37586512 (Hg38)
End
38055717/37586512 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/634121; hsa-mir-1185-1/Downstream/10174483;
Nearest TSS
ENST00000550708/Upstream/19417; ENST00000556845/Downstream/7750;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1551, chr14-CpG: 66/Downstream/1302
Nearby gene
FOXA1
Nearest cancer related gene
FOXA1(OG, No orient)
Upstream sequence
GGTGCAGGCAGCCTCCTGTAAGCTCTGGAAAGCAACCCAGGCAGAATAACCAGGCCTCACTGTATGGTTGTCCAAGTCCTGCACTGTTATACTAATGTAA
Downstream sequence
GGGCTGGGGCTAAAAGAAAAACCAATGGAATTATTATGCCCCCAAACTTAGCTATTTGGAAGAAAAAACACAAGATTTAAGGTAATCTGTTGTTAAATGT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate