Basic Information
VIS ID
TVIS10019360
Fusion event
HBV-chr14 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
47021659/46552456 (Hg38)
End
47021659/46552456 (Hg38)
Nearest miRNA
hsa-mir-208a/Upstream/9600065; hsa-mir-1185-1/Downstream/1208539;
Nearest TSS
ENST00000550708/Upstream/81095; ENST00000557531/Downstream/99365;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1298857, chr14-CpG: 30/Downstream/99209
Nearby gene
LINC00871
Upstream sequence
ATGGGTATTTTCCAGCCCCAGATTGCTTGGTAAAATGATGGTGGAGAACAAAAAGGTGAGGGCTGCAGTCCTAGCTGGCCAAAGTTCAAAGAACCATGCT
Downstream sequence
ttgcacctgtcctaagttctaccacagccacagcaatggtatgaataaaaggtggggctgagggatttataaatggggcataggaATTATACCTTCCCAG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate