SERPINA10 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019364
Fusion event
HBV-SERPINA10 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
GRCh37/hg19
Start
94751881/94285544 (Hg38)
End
94751881/94285544 (Hg38)
Location type
Intron1
Target gene
SERPINA10
Nearest miRNA
hsa-mir-1260a/Upstream/337242; hsa-mir-1185-1/Downstream/852375;
Nearest TSS
ENST00000550708/Upstream/109764; ENST00000536735/Downstream/5104;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/110233, chr14-CpG: 184/Downstream/482731
Upstream sequence
tgccacattttcttaatccagtctatcattgatggacatttgggttggttccaTGAGCTTGATGATATTCTCAAATAGATTCCCTAGCCCTAGGCTGCCT
Downstream sequence
ttatacacacatacatatatacatatatatacacacatatatatatatacatataacaattttagctatttgtggattgggcagctcttcaaagaaatgg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate