Basic Information
VIS ID
TVIS10019365
Fusion event
HBV-LOC105370826 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
53747315/53455118 (Hg38)
End
53747316/53455119 (Hg38)
Location type
Intronic
Target gene
LOC105370826
Nearest miRNA
hsa-mir-10393/Upstream/1177918; hsa-mir-11181/Downstream/1917821;
Nearest TSS
ENST00000557528/Upstream/338753; ENST00000561210/Downstream/85961;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/648839, chr15-CpG: 33/Downstream/304339
Nearby gene
WDR72
Upstream sequence
TTTGCAACCCTTTCTATTTGGAGTCAGCTAAGAGTTTCTTTTGTGTGAGGTCTTCTTTGCACTTTGGCCATGAATATAAGTGATACTATGACCAAAGGTA
Downstream sequence
TGCTCTAGTCAATCAATAACTTTACATGGTAAATGTGAGTCTTAGGCTCGGAAAGAGGTTATCGGCCATAACATTTCTTAACACTTTCATAATGTTATCA
Target sequence
T
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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