Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019366
Fusion event
HBV-GCOM1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr15
Cytoband
q21.3
Reference genome
Start
End
57968468/57676270 (Hg38)
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-10393/Upstream/2303147; hsa-mir-11181/Downstream/1494913;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/84021, chr15-CpG: 68/Downstream/30236
Upstream sequence
GGGAGTGAAAGGAAGAGAGCTTTAGTAAGTAAAGTGAGGATCACCATTTCCATATGCAGAATGGGCTTTCAAACACAGACTACAAAGACCCATGGTTTTA
Downstream sequence
CCATTCTCAAAGAATTTACCAAAAGCGGCATTAGGTTCTTTCTTTGACAGTGTCCTCAATTACATTGCTTGCCTTCTAGTAAAAAGGCATTTTTTATCAG
Target sequence
cattgtaCAGTAAGGCCTCCTTTCCTTACtttattaatttttatttattaCTGGTATTGTCATTTTTGTTAATTAAAATGAATCACTTG
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.