FAM81A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019367
Fusion event
HBV-FAM81A integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr15
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
59722353/59430154 (Hg38)
End
59722353/59430154 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA15A
Target gene
FAM81A
miRNAs that regulate target gene
hsa-mir-148b-3p ; hsa-mir-132-3p ; hsa-mir-1-3p
Nearest miRNA
hsa-mir-10393/Upstream/258892; hsa-mir-11181/Downstream/2874504;
Nearest TSS
ENST00000557528/Upstream/57159; ENST00000558900/Downstream/8019;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/57272, chr15-CpG: 93/Downstream/7717
Nearby gene
FAM81A
Upstream sequence
AAAATATCTTATCTCTGTCCTTGGACAACGTACAATTAAATGAAGGGAAAGTTTGAATGTGGCCTCTGAGGGACTTTGTTTCCCTGAAAACAAAATCATT
Downstream sequence
GGGAGAAAGAATGATTTCAACCAGCAGGGGGATGGGGAGGATAGGACAGTGATGTCACTTCCACCCTTCCTGTGGCACCAAATACACAGACCTATTTCCC
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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