VISDB Viral Integration Site DataBase

VIS ID

TVIS10019368

Fusion event

HBV-SLC28A1 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr15

Cytoband

q25.3

Reference genome

Start

End

85491108/84947877 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-1225-5p ; hsa-mir-4703-3p ; hsa-mir-1244 ; hsa-mir-4506 ; hsa-mir-5089-5p ; hsa-mir-6807-5p ; hsa-mir-6862-5p ; hsa-mir-4253 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-3194-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6849-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-1261 ; hsa-mir-421 ; hsa-mir-4789-5p ; hsa-mir-4790-3p ; hsa-mir-1245b-3p ; hsa-mir-4709-5p ; hsa-mir-5683 ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-186-5p ; hsa-mir-3133 ; hsa-mir-6516-5p ; hsa-mir-432-3p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-7156-3p ; hsa-mir-1193 ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-490-5p ; hsa-mir-4802-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-433-3p ; hsa-mir-6131 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-3653-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-1224-3p ; hsa-mir-3130-3p ; hsa-mir-3682-5p ; hsa-mir-4275 ; hsa-mir-4470 ; hsa-mir-4793-3p ; hsa-mir-497-3p ; hsa-mir-5197-5p ; hsa-mir-544a ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548t-3p ; hsa-mir-767-5p

Nearest miRNA

hsa-mir-10393/Upstream/1880462; hsa-mir-11181/Downstream/432719;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/130243, chr15-CpG: 248/Downstream/32404

Nearby gene

Upstream sequence

caggatgccttcagacaggttcttcactggggcctcggtttctcaacttctaaagtcagtgatttgactaggtaactgctcaggcctctaccagctctaa

Downstream sequence

gctattaacaagaggggaaaatgggtgtgggatatatgggagctcggtagtattggtgcaacattttgtaagtctaaactattctaaaatttaatagttt