Basic Information
VIS ID
TVIS10019369
Fusion event
HBV-chr16 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
p13.12
Reference genome
GRCh37/hg19
Start
13939581/13845724 (Hg38)
End
13939581/13845724 (Hg38)
Nearest miRNA
hsa-mir-1225/Upstream/1125353; hsa-mir-11401/Downstream/458243;
Nearest TSS
ENST00000527434/Upstream/65964; ENST00000576348/Downstream/74433;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/941891, chr16-CpG: 56/Downstream/74170
Nearby gene
ERCC4
Upstream sequence
ctgaaattgcgccactgcactctagcctgggcgacagagcgaaactatgtctcaaaaaaaaaaaaaaaaaaaGTTCAAACATCACAGAGATATTGATAGG
Downstream sequence
aATGTATTGTAAGGACTTTTTCAATGACAGGTGAGAGAGAACTGACTCAATTAAAGAAATGTGTTGGTTCATGAAAGCAGGAAATTAAATTCTACAGTCA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate