Basic Information
VIS ID
TVIS10019371
Fusion event
HBV-LOC110262331 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
33963165/34160698 (Hg38)
End
33963254/34160787 (Hg38)
Location type
Intronic
Target gene
LOC110262331
Nearest miRNA
hsa-mir-1225/Upstream/3266713; hsa-mir-11401/Downstream/2791;
Nearest TSS
ENST00000527434/Upstream/662; ENST00000319817/Downstream/819057;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/678, chr16-CpG: 203/Downstream/1108
Nearby gene
LINC00273
Upstream sequence
TGTGTTTCAAAGACCTCCAATCAAGTTAAGTCTGTTTAGTGAAATGCTTTGTAAAGAAAATGTACATCTATTTTTCAGAGTCACCTTTACATTTTACATT
Downstream sequence
ccctcgatgctcttagctgagtgttccgcggcccaaagcgtttactttgaaaaaattagagtgttcaaagcaggtccaagccgcctggataccgcagcta
Target sequence
aaaaagctcctagttggatcttgggagcgggcgggcagtccgccatgaggcgagccactgcccgtccccgccccttgcctcttggcgcc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate