Basic Information
VIS ID
TVIS10019374
Fusion event
HBV-LOC105371348 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
75911276/75877378 (Hg38)
End
75911276/75877378 (Hg38)
Location type
Intronic
Target gene
LOC105371348
Nearest miRNA
hsa-mir-1225/Upstream/5846956; hsa-mir-11401/Downstream/991558;
Nearest TSS
ENST00000527434/Upstream/16511; ENST00000463177/Downstream/270401;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/228697, chr16-CpG: 18/Downstream/357701
Nearby gene
TERF2IP
Upstream sequence
ttatttagccagtccctgatagatagacactgggtagtgtcctatcttttaggagacagtatttcagacagtaacctgggatatacattttttttctaca
Downstream sequence
cttgataggattacttgtctcttcttgctgatttgtttgagttccttgtagattctgaatattagtcctttcttggatgcatagtttgcaaatattttct
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate