Basic Information
VIS ID
TVIS10019376
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
6943669/7040350 (Hg38)
End
6943745/7040426 (Hg38)
Nearest miRNA
hsa-mir-1253/Upstream/22328; hsa-mir-10226/Downstream/182871;
Nearest TSS
ENST00000595228/Upstream/4253; ENST00000578269/Downstream/3180;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/3579, chr17-CpG: 164/Downstream/1644
Nearby gene
SLC16A11
Upstream sequence
ATCATGACCCAGGACTTGGCGTTATCTGTGATCGCGTGGGTAGGATTCCCTGGCGGGCGTGGGGATGTGAGATGGGAACAGAGCTTTCTGTCCCTGCCAC
Downstream sequence
cccccccctcggccttccaaagtgctgggattacaggcgtgagccaccacacccagccTCCCCTAACCTTTTCTAAAGGACCCAGGAGTTTTGAAGGATC
Target sequence
tgtatttttggtagagacagggtttcaccatgttggccaggatggtctcgaactcctgaccttgtgatccaccccc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate