Basic Information
VIS ID
TVIS10019377
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
p12
Reference genome
GRCh37/hg19
Start
13645202/13741885 (Hg38)
End
13645202/13741885 (Hg38)
Fragile sites / regions
FRA17A
Nearest miRNA
hsa-mir-1253/Upstream/198239; hsa-mir-10226/Downstream/1509742;
Nearest TSS
ENST00000595228/Upstream/139958; ENST00000580134/Downstream/167346;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/139643, chr17-CpG: 41/Downstream/327428
Nearby gene
HS3ST3A1
Upstream sequence
AATGGGTGAAGGAGGCCACGGAGGGGAAGATTCAGGAATTCCTCTCTGGGCTGCCGGAAGACACCGTGTTGCTTCTCCTCAACGCCATCCACTTCCAGGG
Downstream sequence
AACTGACCTTGCCTAGATGGATCATCTGCCCCTAAAGCTGGTGTTGTGCAACTGCTGGCTCCTCAAGAAGGTTTCCTGAAGAAAGAGGGAGTAAGCTTTA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate