Basic Information
VIS ID
TVIS10019379
Fusion event
HBV-chr17 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
51438376/53361015 (Hg38)
End
51438376/53361015 (Hg38)
Nearest miRNA
hsa-mir-10226/Upstream/2592285; hsa-mir-1250/Downstream/3530255;
Nearest TSS
ENST00000595228/Upstream/375495; ENST00000268919/Downstream/461886;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1202141, chr17-CpG: 17/Downstream/396274
Nearby gene
C17orf112
Upstream sequence
AGTCATCGTTCCAGCGGCCATCCGGCTGGACTTCAACACAGTCTTCACTTCCACCCAGCTCGTGCCCGTGCCAATTATCTGGCTGAGTGACAGCCCAGTT
Downstream sequence
TAGACCTTTAATGGTTTTCTATAACAGGGACATATGCTGTGCATTATTAATACTTTCATATGGCCAGCCATCTCACCCTACTCAAAAACTTACAGAGCTT
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate