VISDB Viral Integration Site DataBase

VIS ID

TVIS10019383

Fusion event

HBV-CERS4 integration

Validated

No

Detection method

VirusFinder

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2012

PubMed ID

Virus name

HBV

Reference genome

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

8309070/8244186 (Hg38)

Location type

Intron2

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-3692-3p ; hsa-mir-192-3p ; hsa-mir-502-5p ; hsa-mir-5189-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-4753-3p ; hsa-mir-4313 ; hsa-mir-130b-5p ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-1273f ; hsa-mir-5089-5p ; hsa-mir-4666a-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-6747-3p ; hsa-mir-4740-3p ; hsa-mir-6879-3p ; hsa-mir-153-5p ; hsa-mir-4704-3p ; hsa-mir-500b-3p ; hsa-mir-660-5p ; hsa-mir-335-3p ; hsa-mir-630 ; hsa-mir-4999-5p ; hsa-mir-4718 ; hsa-mir-1537-5p ; hsa-mir-1909-5p ; hsa-mir-4742-3p ; hsa-mir-4501 ; hsa-mir-512-3p ; hsa-mir-1267 ; hsa-mir-1273h-5p ; hsa-mir-1289 ; hsa-mir-149-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-3064-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3198 ; hsa-mir-34b-3p ; hsa-mir-3612 ; hsa-mir-3614-5p ; hsa-mir-367-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4257 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4423-5p ; hsa-mir-4534 ; hsa-mir-4722-5p ; hsa-mir-4768-3p ; hsa-mir-4794 ; hsa-mir-490-3p ; hsa-mir-6500-3p ; hsa-mir-6501-5p ; hsa-mir-6504-5p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6514-5p ; hsa-mir-664a-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6808-5p ; hsa-mir-6822-3p ; hsa-mir-6893-5p ; hsa-mir-744-3p ; hsa-mir-760 ; hsa-mir-7851-3p ; hsa-mir-8057 ; hsa-mir-8082 ; hsa-mir-940

Nearest miRNA

hsa-mir-1227/Upstream/626681; hsa-let-7e/Downstream/145104;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/34025, chr19-CpG: 69/Downstream/63527

Upstream sequence

CTCGTGGGCTATCTCCTTCCCCAGGACTCCCACCTGGGCTGGACTGAGTCTGAGCTCCCAGCCCCAGCTCCTGTTTGGCCGGGCAGTGGGCTCCCCTGTC

Downstream sequence

aaaGCcagaaaaggcaggaaatggctgggtgtggtggctggagcctgtagtcccagctactcgggaggctgaggcaggaagatggcttgagcccaggaga