Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019384
Fusion event
HBV-ZNF546 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
Start
End
40523272/40017365 (Hg38)
Location type
Exon7
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-2467-3p ; hsa-mir-4257 ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-744-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-1827 ; hsa-mir-1304-3p ; hsa-mir-4781-3p ; hsa-mir-1182 ; hsa-mir-4727-5p ; hsa-mir-4252 ; hsa-mir-6817-5p ; hsa-mir-4769-3p ; hsa-mir-4772-3p ; hsa-mir-6890-3p ; hsa-mir-6787-3p ; hsa-mir-7977 ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-7849-3p
Nearest miRNA
hsa-mir-10395/Upstream/187563; hsa-let-7e/Downstream/265178;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/19978, chr19-CpG: 31/Downstream/38548
Upstream sequence
tttccaaagtccccacctcttaatattatccctttggggattaagtttccacataggaatttcggggggggcacatacattcagatcataccaCtcacat
Downstream sequence
AAACTTAAAAGAATAATGAACAGTTATGTTCTatctagattcagcaattgttaatatgttgtcacatttggtttgcttatacataatatttacatatttt
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.