Basic Information
VIS ID
TVIS10019385
Fusion event
HBV-chr19 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
45440270/44937013 (Hg38)
End
45440270/44937013 (Hg38)
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/178292; hsa-let-7e/Downstream/499641;
Nearest TSS
ENST00000633603/Upstream/22144; ENST00000591600/Downstream/5225;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/27670, chr19-CpG: 64/Downstream/17943
Nearby gene
APOC4
Upstream sequence
ctcagcctccagactacctgggattacaggtgcatgccaccatgcccggataatttttgtatttgctagagatggggtttcaccatgttggccaggctgg
Downstream sequence
GCACGAATTAAACAGTAGCTGGCGTTGACGGggcacctatgcggcattttctgtgcacgatctttactctccctggcaaccctatgaggtagatagtcca
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate