Basic Information
VIS ID
TVIS10019386
Fusion event
HBV-LOC105372451 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr19
Cytoband
q13.41
Reference genome
GRCh37/hg19
Start
53261933/52758680 (Hg38)
End
53261933/52758680 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
LOC105372451
Nearest miRNA
hsa-let-7e/Upstream/476787; hsa-mir-10394/Downstream/907999;
Nearest TSS
ENST00000633603/Upstream/23607; ENST00000594546/Downstream/28020;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/23434, chr19-CpG: 46/Downstream/27655
Nearby gene
ZNF600
Upstream sequence
CGCCGAGGTCCTGGCATTGTTTCTGGTTCTCTTCGTCTTGGCATTCGTCCTCCTCGGGCCAGTGCTCCACCCAAGTGTCCTTCCCGATGATGTAGCTGAG
Downstream sequence
tggcttacacctgtaatcccagcactttgagaggctgagaggcttcgatcatctgacatcaggagttcaacatcagcctggccaacatggtgaaaccctg
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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