TASP1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10019388
Fusion event
HBV-TASP1 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
13393893/13413246 (Hg38)
End
13393893/13413246 (Hg38)
Location type
Intron1
Target gene
TASP1
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-4503 ; hsa-mir-100-3p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p
Nearest miRNA
hsa-mir-103a-2/Upstream/2763551; hsa-mir-1-1/Downstream/5057369;
Nearest TSS
ENST00000382410/Upstream/44543; ENST00000469177/Downstream/216765;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/113946, chr20-CpG: 43/Downstream/225392
Upstream sequence
aattaaataaatgttatttaaaacaaacacacaagttatttttttgttcctatGGGATGGTCTTTTTACTACTGATTTTGGGCAAATTTCATTTGCCAGT
Downstream sequence
gctttccctaggtgagggaaatatggtatgggcaacatctgtcctgtttcattaccatgtgtcagagtatgacacagggtttgtcacacaaggcagagaa
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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