Basic Information
VIS ID
TVIS10019389
Fusion event
HBV-LOC107985386 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr20
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
48858830/50242293 (Hg38)
End
48858830/50242293 (Hg38)
Location type
Intronic
Target gene
LOC107985386
Nearest miRNA
hsa-mir-103a-2/Upstream/378340; hsa-mir-1-1/Downstream/343493;
Nearest TSS
ENST00000382410/Upstream/50795; ENST00000421019/Downstream/25193;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/49808, chr20-CpG: 15/Downstream/101334
Nearby gene
SMIM25
Upstream sequence
GCAATCATGTTTTATGGAGTTTGATAAAATCCCATAGTCTCATTAAGGAAATAGTCATCACCAGGATGTGGGCCTCACTTTATAAGAAGATAGAGTAAAA
Downstream sequence
gctaggatttgaacccctttattaactgattgacctcgggcaagttgcttcacctgaacctcagtttcctcatctgtaaaatggggatgataataatacc
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
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