Basic Information
VIS ID
TVIS10019391
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusFinder
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2012
PubMed ID
22634754
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Host Sequence
Chromosome
chr21
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
42663026/41291099 (Hg38)
End
42663026/41291099 (Hg38)
Nearest miRNA
hsa-let-7c/Upstream/123470; hsa-mir-5692b/Downstream/455673;
Nearest TSS
ENST00000624081/Upstream/38634; ENST00000518236/Downstream/13113;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/45006, chr21-CpG: 26/Downstream/13087
Nearby gene
FAM3B
Upstream sequence
gtgtccaacagtaaagaaatcgagtaattgttacacacccatagggtggattattcagtagccattaaaaatagactttaaccattttaaggtcaggaaa
Downstream sequence
taatattattattaaaagaaaaaatataaactgtctatgcagtgtgatgcacaattttgAATGCACACTTCCCACACACACACACACACAGAGAAAAGAA
Reference
Sung, W. K., et al. Genome-wide survey of recurrent HBV integration in hepatocellular carcinoma. Nat Genet,2012, 44(7): 765-769.
Curate